Aliases: SLC7A5, 4F2lc, CD98lc, D16S469E, E16, MPE16
Gene name: solute carrier family 7 member 5 (SLC7A5)
LAT1 is a heterodimeric, sodium- and pH-independent amino acid transporter. ‘L-type’ in its traditional name refers to its classification with ‘System L’, i.e. the leucine-preferring group of amino acid transporters. Its dimerization partner, 4F2hc (SLC3A2) heavy chain, is indispensable for its translocation to the plasma membrane and stability but not for the intrinsic transport function. LAT1 preferentially transports large branched and aromatic neutral amino acids, mostly to proliferating cells and through barriers like the placenta and the blood-brain barrier (BBB). Although some controversy exists whether LAT1 carries out uniport or antiport activity, it is generally modelled as an obligatory exchanger that imports neutral amino acids, including some essential ones such as leucine and tryptophan, in exchange for intracellular nonessential amino acids, mainly glutamine. Therefore, LAT1 and the glutamine-preferring amino acid exchanger ASCT2 are thought to be functionally coupled in some cancer types. LAT1 also transports thyroid hormones, and it is the major importer of amino acid-like CNS drugs across the BBB. Despite its known role in drug transport, the current regulatory guidelines contain no recommendation on investigating interactions of NCEs with LAT1.
LAT1 is ubiquitously expressed, with highest levels observed in the brain, spleen, bone marrow, testis, and placenta. In the blood-brain barrier, LAT1 is localized on both the apical and basolateral membranes. In other polarized epithelia, it is mainly localized in basolateral membranes. In the placenta, LAT1 is present on both the maternal and fetal surfaces of the syncytiotrophoblast [Fotiadis, Mol Aspects Med 2013; Scalise, Front Chem 2018].
According to the Human Protein Atlas, mRNA coding for the heavy chain CD98 is ubiquitously detected, with the highest expression level in kidney, placenta, testis and bone marrow. The expression of CD98 correlates with that of SLC7A5 in terms of localization, as expected from the interaction between the two proteins. However, CD98 is even more broadly expressed since it works as an escort protein for other SLC7 members as well [Fotiadis, Mol Aspects Med 2013].
Function, physiology, and clinically significant polymorphisms
Like all members of the heteromeric amino acid transporter (HAT, SLC7) family, LAT1 resides in the plasma membrane in a heterodimeric form. The LAT1 holotransporter consists of a 55-kDa light chain, SCL7A5 (LAT1 proper), and an escort protein called the heavy chain covalently linked to the light chain via a disulfide bond. LAT1 heterodimerizes with the 4F2hc (SLC3A2) heavy chain, an N-glycosylated ~68-kDa transmembrane protein with 1 membrane-spanning domain. While transport carried out by either chain alone is negligible, the heavy chain is only needed to stabilize the dimer and facilitate its translocation to the plasma membrane, and the actual transport is carried out by the light chain [Yanagida, Biochim Biophys Acta 2001].
LAT1 takes part in the transport of a wide range of neutral amino acids, especially ones with large branched or aromatic side chains. Tryptophan, phenylalanine, leucine, and histidine are transported with high affinity (Km: 5 to 50 μM). Glutamine as an uptake substrate has a low affinity toward LAT1 (Km in the mM range). Histidine and tyrosine are transported bidirectionally, whereas the others are preferentially transported in the inward direction only. LAT1 displays asymmetrical affinity towards bidirectionally transported substrates, with extracellular versus intracellular Km values being in the micromolar versus millimolar range [Meier, EMBO J 2002]. The generally accepted mode of function of LAT1 is obligatory antiport, i.e. the exchange of a large and neutral extracellular substrate for an abundant intracellular amino acid such as glutamine [Singh and Ecker, Int J Mol Sci 2018], albeit a mixed transport model without obligate exchange has also been proposed [Widdows, FASEB J 2015].
In addition to amino acids, LAT1 catalyzes the transport of the thyroid hormones T3 and T4, the nitric oxide-derived S-nitrosothiols, and it is the main point of entry for a number of CNS-acting drugs including the dopamine precursor L-DOPA, the antispastic baclofen, as well as the anticonvulsants gabapentin and pregabalin, to the brain [Scalise, Front Chem 2018; Li, J Biol Chem 2005; Takahashi, Pharm Res 2019]. The organometallic environmental toxicant methylmercury, complexed with L-cysteine, mimics natural System L substrates, and efficient transport of the methylmercury-L-cysteine complex by LAT1 explains its facile access to the brain [Simmons-Willis, Biochem J 2002]. The chemotherapy drug melphalan is also a LAT1 substrate [Goldenberg, J Biol Chem 1979].
The tyrosine-derived compound JPH203, formerly known as KYT-0353, is the most potent and selective inhibitor of LAT1 developed to date [Oda, Cancer Sci 2010]. Prior to the discovery of JPH203, the classical generic System L inhibitor 2‐aminobicyclo‐(2,2,1)‐heptane‐2‐carboxylic acid (BCH) was most commonly used to block LAT1 in in vitro experiments. The thyroid hormone T3 can also act as a competitive inhibitor of LAT1 due to its high affinity, although T3 has low transportability and low selectivity toward LAT1 [Oda, Cancer Sci 2010]. As opposed to methylmercury, inorganic mercury in the form of HgCl2 is a strong inhibitor, rather than a substrate, of LAT1 [Boado, Biochim Biophys Acta 2005].
The principal physiological function of LAT1 is in the transport of essential amino acids across biological barriers such as the intestinal epithelium, the placenta, and the blood-brain barrier, as well as the provision of all cell types with these amino acids for metabolism and signaling [Scalise, Front Chem 2018]. LAT1 gains importance under conditions of increased metabolic demand and cell proliferation such as T cell activation [Hayashi et al. J Immunol 2013] and cancer growth (see Clinical significance).
Of more than 13.000 SNPs of the SLC7A5 gene recorded in the dbSNP database, none is marked as clearly or potentially pathogenic. However, likely pathogenic variants of LAT1, LAT2, and the 4F2hc genes have been described in autism spectrum disorder [Cascio, Mol Genet Genomic Med 2020]. The SNP rs4240803, on the other hand, has been linked to positive therapeutic response in multiple myeloma patients. When investigated ex vivo in patient-derived PBMCs, this SNP was associated with elevated expression of SLC7A5 mRNA and higher sensitivity to melphalan [Poi, Anticancer Res 2019].
LAT1 is overexpressed in many types of human cancer and plays an important role in cancer metabolism. In addition, some cancer-associated mutations of LAT1 are rated as possibly damaging in the BioMuta database [Dingerdissen, Nucleic Acids Res 2018]. In cancer cells, LAT1 collaborates with other amino acid transporters such as ASCT2, SNAT1 and SNAT2 in the ‘harmonization’ of extracellular and intracellular amino acid pools, and its action is required to maintain adequate levels of essential amino acids including leucine [Bröer, J Biol Chem 2016]. In a proposed functional coupling between ASCT2 and LAT1, glutamine imported by ASCT2 into cancer cells is utilized by LAT1 as an exchange substrate [Nicklin, Cell 2009]. Selective inhibition of LAT1 with JPH203, probably by reducing the availability of leucine, contributes to the suppression of the mTOR signaling pathway and the halt of cancer cell proliferation. Inhibition of LAT1 blocked cell cycle progression from G0/G1 to the S phase, and arrested the growth of thyroid cancer in both xenografted and immunocompetent mouse models [Häfliger, J Exp Clin Cancer Res 2018; Enomoto, Sci Rep 2019].
As a major transporter of amino acids across the blood-brain barrier, LAT1 is indispensable for normal brain growth and function. Tryptophan, for example, is a LAT1 substrate and key to healthy neurological development. Reduced amounts of the dopamine precursor L-DOPA and essential amino acids in the brain due to decreased expression and inadequate transport capacity of LAT1 have been linked to the onset and development of Parkinson’s disease [Kageyama, Brain Res 2000]. Mutations that alter the function of LAT1 have been identified among the molecular determinants of autism spectrum disorder, and of the substrates of LAT1 the concentration of histidine showed the greatest pathology-associated variation [Tărlungeanu, Cell 2016; Cascio, Mol Genet Genomic Med 2020].
Given its diverse roles in physiology and disease, LAT1 emerges as an important pharmacological target. Its inhibition may curb supply of amino acids to cancer or T cells, while it may also be exploited for targeted drug delivery. Recently developed structural models of LAT1 empower the discovery of novel potent inhibitors [Singh, Int J Mol Sci 2019] and facilitate the rational design of prodrugs to be delivered to cancer cells or the brain [Chien, J Med Chem 2018].
Despite its known role in drug transport, the current regulatory guidelines contain no recommendation on investigating interactions of NCEs with LAT1.
Summary information for LAT1
In vitro substrate used experimentally
Large branched and aromatic neutral amino acids, thyroid hormones T3 and T4, S-nitrosothiols, L-DOPA
Mostly leucine and isoleucine
Melphalan, baclofen, gabapentin, pregabalin
JPH203, BCH, T3, mercury
Boado RJ, Li JY, Chu C, Ogoshi F, Wise P, Pardridge WM. Site-directed mutagenesis of cysteine residues of large neutral amino acid transporter LAT1. Biochim Biophys Acta. 2005;1715(2):104–110. doi:10.1016/j.bbamem.2005.07.007
Bröer A, Rahimi F, Bröer S. Deletion of Amino Acid Transporter ASCT2 (SLC1A5) Reveals an Essential Role for Transporters SNAT1 (SLC38A1) and SNAT2 (SLC38A2) to Sustain Glutaminolysis in Cancer Cells. J Biol Chem. 2016;291(25):13194–13205. doi:10.1074/jbc.M115.700534
Cascio L, Chen CF, Pauly R, et al. Abnormalities in the genes that encode Large Amino Acid Transporters increase the risk of Autism Spectrum Disorder. Mol Genet Genomic Med. 2020;8(1):e1036. doi:10.1002/mgg3.1036
Chien HC, Colas C, Finke K, et al. Reevaluating the Substrate Specificity of the L-Type Amino Acid Transporter (LAT1). J Med Chem. 2018;61(16):7358–7373. doi:10.1021/acs.jmedchem.8b01007
Dingerdissen HM, Torcivia-Rodriguez J, Hu Y, Chang TC, Mazumder R, Kahsay R. BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. Nucleic Acids Res. 2018;46(D1):D1128–D1136. doi:10.1093/nar/gkx907
Enomoto K, Sato F, Tamagawa S, et al. A novel therapeutic approach for anaplastic thyroid cancer through inhibition of LAT1. Sci Rep. 2019;9(1):14616. Published 2019 Oct 10. doi:10.1038/s41598-019-51144-6
Fotiadis D, Kanai Y, Palacín M. The SLC3 and SLC7 families of amino acid transporters. Mol Aspects Med. 2013;34(2-3):139–158. doi:10.1016/j.mam.2012.10.007
Goldenberg GJ, Lam HY, Begleiter A. Active carrier-mediated transport of melphalan by two separate amino acid transport systems in LPC-1 plasmacytoma cells in vitro. J Biol Chem. 1979;254(4):1057–1064.
Häfliger P, Graff J, Rubin M, et al. The LAT1 inhibitor JPH203 reduces growth of thyroid carcinoma in a fully immunocompetent mouse model. J Exp Clin Cancer Res. 2018;37(1):234. Published 2018 Sep 21. doi:10.1186/s13046-018-0907-z
Hayashi K, Jutabha P, Endou H, Sagara H, Anzai N. LAT1 is a critical transporter of essential amino acids for immune reactions in activated human T cells. J Immunol. 2013;191(8):4080–4085. doi:10.4049/jimmunol.1300923
Kageyama T, Nakamura M, Matsuo A, et al. The 4F2hc/LAT1 complex transports L-DOPA across the blood-brain barrier. Brain Res. 2000;879(1-2):115–121. doi:10.1016/s0006-8993(00)02758-x
Li S, Whorton AR. Identification of stereoselective transporters for S-nitroso-L-cysteine: role of LAT1 and LAT2 in biological activity of S-nitrosothiols. J Biol Chem. 2005;280(20):20102–20110. doi:10.1074/jbc.M413164200
Meier C, Ristic Z, Klauser S, Verrey F. Activation of system L heterodimeric amino acid exchangers by intracellular substrates. EMBO J. 2002;21(4):580–589. doi:10.1093/emboj/21.4.580
Nicklin P, Bergman P, Zhang B, et al. Bidirectional transport of amino acids regulates mTOR and autophagy. Cell. 2009;136(3):521–534. doi:10.1016/j.cell.2008.11.044
Oda K, Hosoda N, Endo H, et al. L-type amino acid transporter 1 inhibitors inhibit tumor cell growth. Cancer Sci. 2010;101(1):173–179. doi:10.1111/j.1349-7006.2009.01386.x
Poi MJ, Li J, Johnson JA, et al. A Single Nucleotide Polymorphism in SLC7A5 Was Associated With Clinical Response in Multiple Myeloma Patients. Anticancer Res. 2019;39(1):67–72. doi:10.21873/anticanres.13080
Scalise M, Galluccio M, Console L, Pochini L, Indiveri C. The Human SLC7A5 (LAT1): The Intriguing Histidine/Large Neutral Amino Acid Transporter and Its Relevance to Human Health. Front Chem. 2018;6:243. Published 2018 Jun 22. doi:10.3389/fchem.2018.00243
Simmons-Willis TA, Koh AS, Clarkson TW, Ballatori N. Transport of a neurotoxicant by molecular mimicry: the methylmercury-L-cysteine complex is a substrate for human L-type large neutral amino acid transporter (LAT) 1 and LAT2. Biochem J. 2002;367(Pt 1):239–246. doi:10.1042/BJ20020841
Singh N, Ecker GF. Insights into the Structure, Function, and Ligand Discovery of the Large Neutral Amino Acid Transporter 1, LAT1. Int J Mol Sci. 2018;19(5):1278. Published 2018 Apr 24. doi:10.3390/ijms19051278
Singh N, Scalise M, Galluccio M, et al. Discovery of Potent Inhibitors for the Large Neutral Amino Acid Transporter 1 (LAT1) by Structure-Based Methods. Int J Mol Sci. 2018;20(1):27. Published 2018 Dec 21. doi:10.3390/ijms20010027
Takahashi Y, Nishimura T, Higuchi K, et al. Transport of Pregabalin Via L-Type Amino Acid Transporter 1 (SLC7A5) in Human Brain Capillary Endothelial Cell Line. Pharm Res. 2018;35(12):246. Published 2018 Oct 29. doi:10.1007/s11095-018-2532-0
Tărlungeanu DC, Deliu E, Dotter CP, et al. Impaired Amino Acid Transport at the Blood Brain Barrier Is a Cause of Autism Spectrum Disorder. Cell. 2016;167(6):1481–1494.e18. doi:10.1016/j.cell.2016.11.013
Widdows KL, Panitchob N, Crocker IP, et al. Integration of computational modeling with membrane transport studies reveals new insights into amino acid exchange transport mechanisms. FASEB J. 2015;29(6):2583–2594. doi:10.1096/fj.14-267773
Yanagida O, Kanai Y, Chairoungdua A, et al. Human L-type amino acid transporter 1 (LAT1): characterization of function and expression in tumor cell lines. Biochim Biophys Acta. 2001;1514(2):291–302. doi:10.1016/s0005-2736(01)00384-4